species:   Rhsol
pid:       PID0512
parent:    Rhi-milR-116
paralog:   
locus:     KB317849.1:9511-9624
matures:   ['UAUUUGCAGCGCUGGACUCUUGG', 'GUGAUGCUCGUGCUGCGGCGCU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317849.1:9511-9624

5 out of bounds
25 alignments
22 proper strand
15 stranded perfect matches

                  *************************                                            ************************   
GACUAUAUUCAAUCUUAAAGUAUUUGCAGCGCUGGACUCUUGGCUUUUGUUGUGUCUUGAGCUGGACUUUACUGGCAAUCGAGAGAGCCGUGAUGCUCGUGCUGCGGCGCUCCU
..................(((..(((((((((.((..((.((((((........(((((((((((......)))))..)))))))))))).))..)).))))))))).)))...
--------------------UAUUUGCAGCGCUGGACUCUUGG----------------------------------------------------------------------- l=23 a=5 c
-----------------------------------------------------------------------------------------GUGAUGCUCGUGCUGCGGCGCU--- l=22 a=0 c*
--------------------UAUUUGCAGCGCUGGACUCUUGG----------------------------------------------------------------------- l=23 a=5 ma
-----------------------------------------------------------------------------------------GUGAUGCUCGUGCUGCGGCGCU--- l=22 a=0 ma*

--------------UUAAAGUAUUUGCAGCGCUG-------------------------------------------------------------------------------- l=20 a=1 
---------------aAAAGUAUUUGCAGCGCUGGACU---------------------------------------------------------------------------- l=23 a=1 
-----------------AAGUAUUUGCAGCGCUGGACUC--------------------------------------------------------------------------- l=22 a=1 
--------------------UAUUUGCAGCGCUGGACUu--------------------------------------------------------------------------- l=19 a=2 
--------------------UAUUUGCAGCGCUGGACUuU-------------------------------------------------------------------------- l=20 a=1 
--------------------UAUUUGCAGCGCUGGACUCa-------------------------------------------------------------------------- l=20 a=1 
--------------------UAUUUGCAGCGCUGGACUCUUGG----------------------------------------------------------------------- l=23 a=5 (c,ma)
--------------------UAUUUGCAGCGCUGGACUCUUGGC---------------------------------------------------------------------- l=24 a=1 
----------------------UUUGCAGCGCUGGACUCUUG------------------------------------------------------------------------ l=20 a=1 
----------------------UUUGCAGCGCUGGACUCUUGG----------------------------------------------------------------------- l=21 a=1 
----------------------UUUGCAGCGCUGGACUCUUGGCa--------------------------------------------------------------------- l=23 a=1 
-----------------------UUGCAGCGCUGGACUCUUGGC---------------------------------------------------------------------- l=21 a=1 
--------------------------------------------------------UcGAGCUGGACUUUACUGG--------------------------------------- l=19 a=1 
--------------------------------------------------------UUGAGCUGGACUUUACUGGC-------------------------------------- l=20 a=1 
--------------------------------------------------------------UGGACUUUACUGGCAAUCGAG------------------------------- l=21 a=1 
--------------------------------------------------------------UGGACUUUACUGGCAAUCGAGAG----------------------------- l=23 a=1 
--------------------------------------------------------------------UUACUGGCAAUCGAGAGAGC-------------------------- l=20 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-111
